Package: rxode2ll 2.0.18

Matthew L. Fidler

rxode2ll: Log-Likelihood Functions for 'rxode2'

Provides the log-likelihoods with gradients from 'stan' (Carpenter et al (2015), <doi:10.48550/arXiv.1509.07164>) needed for generalized log-likelihood estimation in 'nlmixr2' (Fidler et al (2019) <doi:10.1002/psp4.12445>). This is split of to reduce computational burden of recompiling 'rxode2' (Wang, Hallow and James (2016) <doi:10.1002/psp4.12052>) which runs the 'nlmixr2' models during estimation.

Authors:Matthew L. Fidler [aut, cre]

rxode2ll_2.0.18.tar.gz
rxode2ll_2.0.18.zip(r-4.7-x86_64)rxode2ll_2.0.18.zip(r-4.7-arm64)rxode2ll_2.0.18.zip(r-4.6-x86_64)rxode2ll_2.0.18.zip(r-4.6-arm64)rxode2ll_2.0.18.zip(r-4.5-x86_64)
rxode2ll_2.0.18.tgz(r-4.6-x86_64)rxode2ll_2.0.18.tgz(r-4.6-arm64)rxode2ll_2.0.18.tgz(r-4.5-x86_64)rxode2ll_2.0.18.tgz(r-4.5-arm64)
rxode2ll_2.0.18.tar.gz(r-4.7-arm64)rxode2ll_2.0.18.tar.gz(r-4.7-x86_64)rxode2ll_2.0.18.tar.gz(r-4.6-arm64)rxode2ll_2.0.18.tar.gz(r-4.6-x86_64)
rxode2ll_2.0.18.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
rxode2ll/json (API)

# Install 'rxode2ll' in R:
install.packages('rxode2ll', repos = c('https://nlmixr2.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/nlmixr2/rxode2ll/issues

Pkgdown/docs site:https://nlmixr2.github.io

Uses libs:
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library

On CRAN:

Conda:

cppopenmp

6.76 score 3 stars 20 packages 1 scripts 2.1k downloads 28 exports 7 dependencies

Last updated from:c456ebba22. Checks:15 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK410
linux-devel-x86_64OK458
source / vignettesOK393
linux-release-arm64OK436
linux-release-x86_64OK397
macos-release-arm64OK285
macos-release-x86_64OK678
macos-oldrel-arm64OK289
macos-oldrel-x86_64OK824
windows-devel-arm64OK555
windows-devel-x86_64OK650
windows-release-arm64OK641
windows-release-x86_64OK771
windows-oldrel-x86_64OK694
wasm-releaseOK439

Exports:.rxode2llPtrllikBetallikBetaProportionllikBinomllikCauchyllikChisqllikDblExpllikExpllikFllikFrechetllikGammallikGeomllikGumbelllikInvChisqllikInvGammallikLnormllikLogisllikNbinomllikNbinomMullikNormllikParetollikParetoType2llikPoisllikRayleighllikScaledInvChisqllikTllikUnifllikWeibull

Dependencies:backportsBHcheckmateRcppRcppEigenRcppParallelStanHeaders

Readme and manuals

Help Manual

Help pageTopics
External pointers to rxode2ll's log-likelihood functions.rxode2llPtr
Calculate the log likelihood of the binomial function (and its derivatives)llikBeta
log likelihood of the BetaProportion distribution and its derivatives (from stan)llikBetaProportion
Calculate the log likelihood of the binomial function (and its derivatives)llikBinom
log likelihood of Cauchy distribution and it's derivatives (from stan)llikCauchy
log likelihood and derivatives for chi-squared distributionllikChisq
log likelihood of the DblExp distribution and its derivatives (from stan)llikDblExp
log likelihood and derivatives for exponential distributionllikExp
log likelihood and derivatives for F distributionllikF
log likelihood of the Frechet distribution and its derivatives (from stan)llikFrechet
log likelihood and derivatives for Gamma distributionllikGamma
log likelihood and derivatives for Geom distributionllikGeom
log likelihood of the Gumbel distribution and its derivatives (from stan)llikGumbel
log likelihood of the InvChisq distribution and its derivatives (from stan)llikInvChisq
log likelihood of the InvGamma distribution and its derivatives (from stan)llikInvGamma
log likelihood of the Lnorm distribution and its derivatives (from stan)llikLnorm
log likelihood of the Logis distribution and its derivatives (from stan)llikLogis
Calculate the log likelihood of the negative binomial function (and its derivatives)llikNbinom
Calculate the log likelihood of the negative binomial function (and its derivatives)llikNbinomMu
Log likelihood for normal distributionllikNorm
log likelihood of the Pareto distribution and its derivatives (from stan)llikPareto
log likelihood of the ParetoType2 distribution and its derivatives (from stan)llikParetoType2
log-likelihood for the Poisson distributionllikPois
log likelihood of the Rayleigh distribution and its derivatives (from stan)llikRayleigh
log likelihood of the ScaledInvChisq distribution and its derivatives (from stan)llikScaledInvChisq
Log likelihood of T and it's derivatives (from stan)llikT
log likelihood and derivatives for Unif distributionllikUnif
log likelihood and derivatives for Weibull distributionllikWeibull