Package: rxode2 3.0.0
![](https://github.com/nlmixr2/rxode2/raw/HEAD/logo.png)
rxode2: Facilities for Simulating from ODE-Based Models
Facilities for running simulations from ordinary differential equation ('ODE') models, such as pharmacometrics and other compartmental models. A compilation manager translates the ODE model into C, compiles it, and dynamically loads the object code into R for improved computational efficiency. An event table object facilitates the specification of complex dosing regimens (optional) and sampling schedules. NB: The use of this package requires both C and Fortran compilers, for details on their use with R please see Section 6.3, Appendix A, and Appendix D in the "R Administration and Installation" manual. Also the code is mostly released under GPL. The 'VODE' and 'LSODA' are in the public domain. The information is available in the inst/COPYRIGHTS.
Authors:
rxode2_3.0.0.tar.gz
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rxode2.pdf |rxode2.html✨
rxode2/json (API)
NEWS
# Install 'rxode2' in R: |
install.packages('rxode2', repos = c('https://nlmixr2.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/nlmixr2/rxode2/issues
- rxReservedKeywords - A list and description of rxode2 supported reserved keywords
- rxResidualError - A description of Rode2 supported residual errors
- rxSyntaxFunctions - A list and description of Rode supported syntax functions
Last updated 5 days agofrom:f8a519eb01. Checks:OK: 9. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Sep 03 2024 |
R-4.5-win-x86_64 | OK | Sep 03 2024 |
R-4.5-linux-x86_64 | OK | Sep 03 2024 |
R-4.4-win-x86_64 | OK | Sep 03 2024 |
R-4.4-mac-x86_64 | OK | Sep 03 2024 |
R-4.4-mac-aarch64 | OK | Sep 03 2024 |
R-4.3-win-x86_64 | OK | Sep 03 2024 |
R-4.3-mac-x86_64 | OK | Sep 03 2024 |
R-4.3-mac-aarch64 | OK | Sep 03 2024 |
Exports:.assertRenameErrorModelLine.cbindOme.clearPipe.collectWarnings.convertId.copyUi.expandPars.extraC.extraCnow.getLastIdLvl.getWh.handleSingleErrTypeNormOrTFoceiBase.iniGetAppendArg.iniHandleFixOrUnfix.iniHandleLine.linCmtSensB.malert.matchesLangTemplate.minfo.modelHandleModelLines.msuccess.mwarn.pipeDfObs.pipeDfSub.pipeEvents.pipeInits.pipeKeep.pipeNStud.pipeNSub.pipeOmega.pipeParams.pipeRx.pipeSigma.pipeThetaMat.quoteCallInfoLines.rxC.rxDocTable.rxFromSE.rxGetHiBoundaryPred1AndIni.rxGetLambdaFromPred1AndIni.rxGetLowBoundaryPred1AndIni.rxGetPredictionDVTransform.rxGetPredictionF.rxGetPredictionFTransform.rxGetVarianceForErrorType.rxIsLinCmt.rxJacobian.rxLinCmtGen.rxode2ptrs.rxPrune.rxRename.rxSEeqUsr.rxSens.rxToSE.rxTransInfo.rxWithOptions.rxWithSink.rxWithSinkBoth.rxWithWd.s3register.symengineFs.toClassicEvid.udfCallFunArg.udfEnvReset.udfEnvSet.udfEnvSetUdf.udfExists.udfMd5Info.useUtf.vecDf%>%add.dosingadd.samplingaesas.etas.inias.modelas.rxEvidas.rxRateDuras.rxUiassertCompartmentExistsassertCompartmentNameassertCompartmentNewassertExistsassertParameterValueassertRxLinCmtassertRxUiassertRxUiEstimatedResidualsassertRxUiMixedOnlyassertRxUiMuRefOnlyassertRxUiNormalassertRxUiPopulationOnlyassertRxUiPredictionassertRxUiRandomOnIdOnlyassertRxUiSingleEndpointassertRxUiTransformNormalassertRxUnboundedassertVariableExistsassertVariableNameassertVariableNewbinomProbscvPostdfWisharterfetetExpandetRbindetRepetSeqetTranseventTableexpand_limitsexpitfacet_wrapfindLhsforderForceBasegammapgammapDergammapInvgammapInvagammaqgammaqInvgammaqInvagenShinyApp.templategeom_amtgeom_censgeom_linegetBaseIniSimModelgetBaseSimModelgetBaseSymengineModelgetRxThreadsggplotguide_noneiniini<-invWR1dis.rxEtis.rxSolveis.rxStackDatalabel_bothlabel_contextlabel_valuelabel_wrap_genllikBetallikBinomllikCauchyllikChisqllikExpllikFllikGammallikGeomllikNbinomllikNbinomMullikNormllikPoisllikTllikUnifllikWeibulllogitlogitNormInfolotrilowergammameanProbsmodelmodel<-modelExtractodeMethodToIntphiprobitprobitInvprobitNormInforinvchisqrLKJ1rxAllowUnloadrxAppendModelrxAssignControlValuerxAssignPtrrxbetarxbinomrxBlockZerosrxCrxCatrxcauchyrxCbindStudyIndividualrxChainrxChain2rxchisqrxCleanrxCombineErrorLinesrxCompilerxConditionrxControlrxControlUpdateSensrxCoresrxCreateCacherxDrxDeleterxDemoteAddErrrxDerivedrxDfdyrxDllrxDllLoadedrxDynLoadrxDynUnloadrxErrTypeCombinerxEtDispatchSolverxEvidrxexprxExpandFEta_rxExpandGridrxExpandGrid_rxExpandIfElserxExpandSens_rxExpandSens2_rxfrxFixPoprxForgetrxFromSErxFunrxFunParserxgammarxgeomrxGetControlrxGetDistributionSimulationLinesrxGetLinrxGetModelrxGetrxode2rxGetSeedrxHtmlrxIndLinStaterxIndLinStrategyrxInitrxInitsrxInvrxIsrxIsCurrentrxIsLoadedrxLhsrxLoadrxLockrxMd5rxModels_rxModelVarsrxModelVarsS3rxnbinomrxnbinomMurxnormrxNormrxnormVrxodeRxODErxode<-RxODE<-rxode2rxode2<-rxode2parserxode2parseAssignPackagesToLoadrxode2parseAssignPointerTranslationrxode2parseAssignTranslationrxode2parseDrxode2parseGetPackagesToLoadrxode2parseGetPointerAssignmentrxode2parseGetTranslationrxOptExprrxordrxParamrxParamsrxParseErrrxParsePkrxParsePredrxParseSetSilentErrrxParseSuppressMsgrxPkgrxpoisrxPprxPreferredDistributionNamerxProgressrxProgressAbortrxProgressStoprxPrunerxRateDurrxReloadrxRemoveControlrxRenamerxRepR0_rxReqrxRmFunrxRmFunParserxRmvnrxSrxSeedEngrxSetControlrxSetCovariateNamesForPipingrxSetIni0rxSetPipingAutorxSetProdrxSetProgressBarrxSetSeedrxSetSilentErrrxSetSumrxSetupInirxSetupScalerxShinyrxSimThetaOmegarxSolverxSolveFreerxSolveSetuprxSplitPlusQrxStackrxStaterxSumProdModelrxSupportedFunsrxSuppressMsgrxSymInvCholrxSymInvCholCreaterxSymInvCholNrxSyncOptionsrxtrxTempDirrxTestrxThemerxTickrxToSErxTransrxUiCompressrxUiDecompressrxUiGetrxunifrxUnloadrxUnloadAllrxUnlockrxUserxValidaterxVersionrxweibullrxWithPreserveSeedrxWithSeedscale_typescale_x_continuousscale_x_datescale_x_discretescale_y_continuousscale_y_datescale_y_discretesetRxThreadsstat_amtstat_censswapMatListWithCubetestCompartmentExiststestExiststestRxLinCmttestRxUnboundedtestVariableExiststoTrialDurationuppergammawaiverwarnRxBoundedwrite.template.serverwrite.template.uixlabylabzeroRe
Dependencies:backportsBHcachemcheckmateclicolorspacecpp11cpp11armadillocrayondata.tabledigestdparserfansifarverfastmapggplot2gluegtableinlineisobandlabelinglatticelazyevallifecyclelotrimagrittrMASSMatrixmemoisemgcvmunsellnlmepillarpkgconfigPreciseSumsqsR6RApiSerializeRColorBrewerRcppRcppArmadilloRcppEigenRcppParallelrexrlangrxode2llscalessitmoStanHeadersstringfishsystibbleutf8vctrsviridisLitewithr