Package: babelmixr2 0.1.11.9000

Matthew Fidler

babelmixr2: Use 'nlmixr2' to Interact with Open Source and Commercial Software

Run other estimation and simulation software via the 'nlmixr2' (Fidler et al (2019) <doi:10.1002/psp4.12445>) interface including 'PKNCA', 'NONMEM' and 'Monolix'. While not required, you can get/install the 'lixoftConnectors' package in the 'Monolix' installation, as described at the following url <https://monolixsuite.slp-software.com/r-functions/2024R1/installation-and-initialization>. When 'lixoftConnectors' is available, 'Monolix' can be run directly instead of setting up command line usage.

Authors:Matthew Fidler [aut, cre], Bill Denney [aut], Theodoros Papathanasiou [ctb], Nook Fulloption [ctb]

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manual.pdf |manual.html✨
card.svg |card.png
babelmixr2/json (API)
NEWS

# Install 'babelmixr2' in R:
install.packages('babelmixr2', repos = c('https://nlmixr2.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/nlmixr2/babelmixr2/issues

Pkgdown/docs site:https://nlmixr2.github.io

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

monolixnonmempharmacometricscpp

6.01 score 14 stars 70 scripts 461 downloads 149 exports 149 dependencies

Last updated from:4d44176880. Checks:2 FAIL, 11 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64FAIL183
linux-devel-x86_64FAIL182
source / vignettesOK291
linux-release-arm64OK344
linux-release-x86_64OK355
macos-release-arm64OK210
macos-release-x86_64OK901
macos-oldrel-arm64OK236
macos-oldrel-x86_64OK532
windows-develOK395
windows-releaseOK396
windows-oldrelOK345
wasm-releaseOK229

Exports:.fmeMcmcF.minfo.nlmixrNlmeFun.popedCluster.popedF.popedFree.popedRxRunSetup.popedSolveIdME.popedSolveIdME2.popedW.pseudoOptimF%>%ACFadd.dosingadd.samplingaddCwresaddNpdeaddTableas.nlmixras.nlmixr2as.nonmem2rxaugPredbabel.poped.databasebabelBpopIdxbblDatToMonolixbblDatToMrgsolvebblDatToNonmembblDatToPkncabblDatToRxodebobyqaControlbootplotbootstrapFitetetExpandeventTableexpitfixed.effectsfixeffmeMcmcControlfoceiControlgeom_amtgeom_censgetDatagetStandardColNamesgetValidNlmixrCtlgetVarCovgroupedDatainiini<-lbfgsb3cControllogitlotrimlxtranmodelmodel<-modelUnitConversionmonolix2rxmonolixControln1qn1ControlnewuoaControlnlmControlnlmenlmeControlnlminbControlnlmixrnlmixr2nlmixr2AllEstnlmixr2Estnlmixr2NlmeControlnlsControlnmcovnmextnmGetDistributionMonolixLinesnmGetDistributionNonmemLinesnminfonmObjGetControlnmObjGetFoceiControlnmObjHandleControlObjectnmtabnmxmlnonmem2rxnonmemControloptimControlpdBlockedpdCompSymmpdConstructpdDiagpdFactorpdIdentpdLogCholpdMatpdMatrixpdNaturalpdSymmpkncaControlpopedControlpopedGetMultipleEndpointModelingTimespopedMultipleEndpointIndexDataFramepopedMultipleEndpointParampopedMultipleEndpointResetTimeIndexpreconditionFitprobitprobitInvprofileFixedprofileFixedSingleprofileLlppseudoOptimControlrandom.effectsranefreStructrxCatrxCleanrxControlrxDerivedrxFunrxModelVarsrxodeRxODErxode2rxParamrxParamsrxSetPipingAutorxSetSeedrxSolverxToMonolixrxToNonmemrxUiGetsaemControlsetOfvsimplifyUnitstat_amtstat_censtableControltraceplotuobyqaControlvarCombvarConstPowerVarCorrvarExpvarFixedvarFuncvarIdentvarPowervarWeightsvpcCensvpcCensTadvpcPlotvpcPlotTadvpcSim

Dependencies:armadillo4raskpassassertthatbackportsbase64encBHbinombitbit64bitopsbootbslibcachemcellrangercheckmateclassclicliprclustercolorspacecommonmarkcpp11cpp4rcrayoncurldata.tableDerivdescDescToolsdigestdparserdplyre1071evaluateExactexpmfarverfastmapfontawesomeforcatsforeignFormulafsgenericsggforceggplot2ggtextgldgluegridExtragridtextgtablehavenhighrHmischmshtmlTablehtmltoolshtmlwidgetshttrinlineisobandjpegjquerylibjsonliteknitrlabelinglatticelbfgsb3clifecyclelitedownlmomlotrimagrittrmarkdownMASSMatrixmemoisemimeminpack.lmminqamonolix2rxmvtnormn1qn1nlmenlmixr2datanlmixr2estnlmixr2extranlmixr2plotnnetnonmem2rxnumDerivopensslpanderpillarpkgconfigpngpolyclipPreciseSumsprettyunitsprogressproxypurrrqs2R6rappdirsRColorBrewerRcppRcppArmadilloRcppEigenRcppParallelRCurlreadrreadxlrematchrexrlangrmarkdownrootSolverpartrstudioapirxode2rxode2llS7sassscalessitmoStanHeadersstringfishstringistringrsymenginesyssystemfontstibbletidyrtidyselecttinytextweenrtzdbutf8vctrsviridisLitevroomwithrxfunxgxrxml2yaml