rxode2
information and compare to what the loaded
model information should be. This allows better checking of which
model is loaded and even more robust stability. It requires
rxode2
> 3.0.2
.Fix bug where PopED
could error with certain dvid
values
Fix bug where if/else clauses in the model could cause the model to not predict the values correctly.
Fix bug so that shrinkage()
calculation works
Fix bug so that you can mix 2 different PopED
data bases in an
analysis without crashing R. While this didn't occur with every
database clash, it more frequently occurred when you interleaved
PopED
code between two different PopED
databases, like in issue
#131.
Added a new function babelBpopIdx(poped.db, "par")
which will get
the poped index for a model generated from babelmixr2
, which is
useful when calculating the power (as in example 11).
Added experimental PopED
integration
Removed dependence on rxode2parse
Imported monolix2rx
from the monolix2rx
package
Also allow conversion of a model imported from monolix to a
nlmixr2
fit.
Changed default NONMEM rounding protection to FALSE
Added a run
option to the monolixControl()
and nonemControl()
in case you only want to export the modeling files and not run the
models.
Handle algebraic mu
expressions
PKNCA controller now contains rxControl
since it is used for some
translation options
This revision will load the pruned ui model to query the compartment properties (i.e. bioavailability, lag time, etc) when writing out the NONMEM model. It should fix issues where the PK block does not define some of the variables and will have a larger calculated variable that can be used in the model instead.
When nonmem2rx
has a different lst
file, as long as
nonmem2rx::nminfo(file)
works, then a successful conversion to a
nlmixr2
fit object will occur.
Fix to save parameter history into $parHistData
to accommodate
changes in focei
's output ($parHist
is now derived).
Changed the solving options to match the new steady state options in
rxode2
and how NONMEM implements them. Also changed the iwres
model to account for the rxerr.
instead of the err.
which was
updated in rxode2
as well.
Add new method as.nlmixr2
to convert nonmem2rx
methods to nlmixr
fits
Dropped pmxTools
in favor of nonmem2rx
to conserve some of the
methods
Babelmixr has support for "monolix", "nonmem", and "pknca" methods on release.
Added a NEWS.md
file to track changes to the package.