Package: nlmixr2targets 0.0.0.9000

Bill Denney

nlmixr2targets: Targets for 'nlmixr2' Pipelines

'nlmixr2' often has long runtimes. A pipeline toolkit tailored to 'nlmixr2' workflows leverages 'targets' and 'nlmixr2' to ease reproducible workflows. 'nlmixr2targets' ensures minimal rework in model development with 'nlmixr2' and 'targets' by simplifying and standardizing models and datasets.

Authors:Bill Denney [aut, cre]

nlmixr2targets_0.0.0.9000.tar.gz
nlmixr2targets_0.0.0.9000.zip(r-4.5)nlmixr2targets_0.0.0.9000.zip(r-4.4)nlmixr2targets_0.0.0.9000.zip(r-4.3)
nlmixr2targets_0.0.0.9000.tgz(r-4.4-any)nlmixr2targets_0.0.0.9000.tgz(r-4.3-any)
nlmixr2targets_0.0.0.9000.tar.gz(r-4.5-noble)nlmixr2targets_0.0.0.9000.tar.gz(r-4.4-noble)
nlmixr2targets_0.0.0.9000.tgz(r-4.4-emscripten)nlmixr2targets_0.0.0.9000.tgz(r-4.3-emscripten)
nlmixr2targets.pdf |nlmixr2targets.html✨
nlmixr2targets/json (API)
NEWS

# Install 'nlmixr2targets' in R:

install.packages('nlmixr2targets', repos = c('https://nlmixr2.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/nlmixr2/nlmixr2targets/issues

On CRAN:

3.18 score 6 scripts 6 exports 78 dependencies

Last updated 8 months agofrom:83a437ed4d. Checks:OK: 1 ERROR: 6. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 15 2024
R-4.5-win	ERROR	Nov 15 2024
R-4.5-linux	ERROR	Nov 15 2024
R-4.4-win	ERROR	Nov 15 2024
R-4.4-mac	ERROR	Nov 15 2024
R-4.3-win	ERROR	Nov 15 2024
R-4.3-mac	ERROR	Nov 15 2024

Exports:assign_origData nlmixr_data_simplify nlmixr_object_simplify tar_nlmixr tar_nlmixr_multimodel tar_nlmixr_raw

Dependencies:backports base64url BH cachem callr checkmate cli codetools colorspace cpp11 cpp11armadillo crayon data.table digest dparser evaluate fansi farver fastmap ggplot2 glue gtable highr igraph inline isoband knitr labeling lattice lazyeval lbfgsb3c lifecycle lotri magrittr MASS Matrix memoise mgcv minqa munsell n1qn1 nlme nlmixr2data nlmixr2est numDeriv pillar pkgconfig PreciseSums processx ps qs R6 RApiSerialize RColorBrewer Rcpp RcppArmadillo RcppEigen RcppParallel rex rlang rxode2 rxode2ll scales secretbase sitmo StanHeaders stringfish symengine sys targets tibble tidyselect utf8 vctrs viridisLite withr xfun yaml

Estimating nlmixr2 models with 'nlmixr2targets'

Rendered fromestimating.Rmdusingknitr::rmarkdownon Nov 15 2024.

Last update: 2024-03-20
Started: 2024-03-08

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Replace the fit data with the original data, then return the modified fit	assign_origData
Standardize and simplify data for nlmixr2 estimation	nlmixr_data_simplify
Simplify an nlmixr object	nlmixr_object_simplify
Generate a set of targets for nlmixr estimation	tar_nlmixr tar_nlmixr_raw
Generate a list of models based on a single dataset and estimation method	tar_nlmixr_multimodel
Does the model list refer to another model in the model list?	tar_nlmixr_multimodel_has_self_reference tar_nlmixr_multimodel_has_self_reference_single
Generate nlmixr multimodel target set for all models in one call to 'tar_nlmixr_multimodel()'	tar_nlmixr_multimodel_parse
Generate a single nlmixr multimodel target set for one model	tar_nlmixr_multimodel_single