Package: nlmixr2targets 0.0.0.9000

Bill Denney

nlmixr2targets: Targets for 'nlmixr2' Pipelines

'nlmixr2' often has long runtimes. A pipeline toolkit tailored to 'nlmixr2' workflows leverages 'targets' and 'nlmixr2' to ease reproducible workflows. 'nlmixr2targets' ensures minimal rework in model development with 'nlmixr2' and 'targets' by simplifying and standardizing models and datasets.

Authors:Bill Denney [aut, cre]

nlmixr2targets_0.0.0.9000.tar.gz
nlmixr2targets_0.0.0.9000.zip(r-4.7)nlmixr2targets_0.0.0.9000.zip(r-4.6)nlmixr2targets_0.0.0.9000.zip(r-4.5)
nlmixr2targets_0.0.0.9000.tgz(r-4.6-any)nlmixr2targets_0.0.0.9000.tgz(r-4.5-any)
nlmixr2targets_0.0.0.9000.tar.gz(r-4.7-any)nlmixr2targets_0.0.0.9000.tar.gz(r-4.6-any)
nlmixr2targets_0.0.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
nlmixr2targets/json (API)
NEWS

# Install 'nlmixr2targets' in R:

install.packages('nlmixr2targets', repos = c('https://nlmixr2.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/nlmixr2/nlmixr2targets/issues

Pkgdown/docs site:https://nlmixr2.github.io

On CRAN:

3.00 score 6 scripts 9 exports 75 dependencies

Last updated from:f892c4ebbc. Checks:1 FAIL, 5 OK, 3 ERROR. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	FAIL	152
source / vignettes	OK	198
linux-release-x86_64	OK	152
macos-release-arm64	OK	127
macos-oldrel-arm64	OK	114
windows-devel	ERROR	105
windows-release	ERROR	179
windows-oldrel	ERROR	113
wasm-release	OK	141

Exports:assign_origData nlmixr_data_simplify nlmixr_object_complicate nlmixr_object_simplify nlmixr_object_zero_initial_eval nlmixr2_indirect tar_nlmixr tar_nlmixr_multimodel tar_nlmixr_raw

Dependencies:armadillo4r backports base64url BH cachem callr checkmate cli codetools cpp11 cpp4r crayon data.table desc digest dparser evaluate farver fastmap ggplot2 glue gtable highr igraph inline isoband knitr labeling lattice lbfgsb3c lifecycle lotri magrittr Matrix memoise minqa n1qn1 nlme nlmixr2data nlmixr2est numDeriv pillar pkgconfig PreciseSums prettyunits processx ps qs2 R6 RColorBrewer Rcpp RcppArmadillo RcppEigen RcppParallel rex rlang rxode2 rxode2ll S7 scales secretbase sitmo StanHeaders stringfish symengine sys targets tibble tidyselect utf8 vctrs viridisLite withr xfun yaml

Estimating nlmixr2 models with 'nlmixr2targets'

Rendered fromestimating.Rmdusingknitr::rmarkdownon Jun 02 2026.

Last update: 2024-03-20
Started: 2024-03-08

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Replace the fit data with the original data, then return the modified fit	assign_origData
Standardize and simplify data for nlmixr2 estimation	nlmixr_data_simplify
Re-attach labels, metadata, and original data to a simplified fit	nlmixr_object_complicate
Simplify an nlmixr object	nlmixr_object_simplify
Runtime helper: undo the 'cmt(0) -> cmt(initial)' rewrite before evaluating the captured 'object' expression.	nlmixr_object_zero_initial_eval
Estimate an nlmixr2 model loading the model from a targets indirect hash storage	nlmixr2_indirect
Generate a set of targets for nlmixr estimation	tar_nlmixr tar_nlmixr_raw
Generate a list of models based on a single dataset and estimation method	tar_nlmixr_multimodel
Does the model list refer to another model in the model list?	tar_nlmixr_multimodel_has_self_reference tar_nlmixr_multimodel_has_self_reference_single
Generate nlmixr multimodel target set for all models in one call to 'tar_nlmixr_multimodel()'	tar_nlmixr_multimodel_parse
Generate a single nlmixr multimodel target set for one model	tar_nlmixr_multimodel_single