Package: nlmixr2targets 0.1.0.9000

Bill Denney

nlmixr2targets: Targets for 'nlmixr2' Pipelines

'nlmixr2' often has long runtimes. A pipeline toolkit tailored to 'nlmixr2' workflows leverages 'targets' and 'nlmixr2' to ease reproducible workflows. 'nlmixr2targets' ensures minimal rework in model development with 'nlmixr2' and 'targets' by simplifying and standardizing models and datasets.

Authors:Bill Denney [aut, cre]

nlmixr2targets_0.1.0.9000.tar.gz
nlmixr2targets_0.1.0.9000.zip(r-4.7-any)nlmixr2targets_0.1.0.9000.zip(r-4.6-any)nlmixr2targets_0.1.0.9000.zip(r-4.5-any)
nlmixr2targets_0.1.0.9000.tgz(r-4.6-any)nlmixr2targets_0.1.0.9000.tgz(r-4.5-any)
nlmixr2targets_0.1.0.9000.tar.gz(r-4.7-any)nlmixr2targets_0.1.0.9000.tar.gz(r-4.6-any)
nlmixr2targets_0.1.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
nlmixr2targets/json (API)

# Install 'nlmixr2targets' in R:
install.packages('nlmixr2targets', repos = c('https://nlmixr2.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/nlmixr2/nlmixr2targets/issues

Pkgdown/docs site:https://nlmixr2.github.io

On CRAN:

Conda:

5.52 score 11 scripts 474 downloads 12 exports 85 dependencies

Last updated from:9dd57d714d. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK505
source / vignettesOK406
linux-releaseOK425
macos-releaseOK371
macos-oldrelOK322
windows-develOK499
windows-releaseOK468
windows-oldrelOK513
wasm-releaseOK131

Exports:assign_origDatanlmixr_data_simplifynlmixr_object_complicatenlmixr_object_covariatesnlmixr_object_simplifynlmixr_object_zero_initial_evalnlmixr2_indirectnlmixr2targets_cache_prunenlmixr2targets_cache_statustar_nlmixrtar_nlmixr_multimodeltar_nlmixr_raw

Dependencies:armadillo4rbackportsbase64urlBHcachemcallrcheckmateclicodetoolscpp11cpp4rcrayondata.tabledigestdparserevaluatefarverfastmapggplot2gluegtablehighrigraphinlineisobandknitrL0Learnlabelinglatticelbfgsb3clifecyclelotrimagrittrMASSMatrixmemoiseminqamirain1qn1nanonextnlmenlmixr2datanlmixr2estnumDerivotelpillarpkgconfigplyrPreciseSumsprettyunitsprocessxpsqs2R6RColorBrewerRcppRcppArmadilloRcppEigenRcppParallelRcppTrustreshape2rexrlangrxode2rxode2lincmtrxode2llS7scalessecretbasesitmoStanHeadersstringfishstringistringrsymenginesystargetstibbletidyselectutf8vctrsviridisLitewithrxfunyaml

Events for loggers
The rxode2 event bus | What a tar_nlmixr() pipeline emits | fitUpdate | assign | One run per model | What is not emitted | Logging on target workers | Listening yourself

Last update: 2026-10-18
Started: 2026-10-18

Caching strategy and reruns
What triggers a re-fit? | Examples of common edits | Inspecting and pruning the indirect cache | tar_outdated() is a quick way to preview what would rerun

Last update: 2026-10-17
Started: 2026-06-13

Estimating nlmixr2 models with 'nlmixr2targets'
Introduction to nlmixr2targets | Initial conditions | Running one model with one dataset (tar_nlmixr()) | Running multiple models with one dataset (tar_nlmixr_multimodel()) | Model piping for multiple models estimated with one dataset | Continuing the pipeline when a model fails | What nlmixr2targets passes to nlmixr2est::nlmixr() -- and what it omits | table (passed, but only when you change it) | ... -- nothing to pass | save -- the targets store already does this | envir -- explicitly omitted

Last update: 2026-09-06
Started: 2024-03-08

Multimodel comparison workflows
Why a dedicated multimodel factory? | Minimal comparison plan | Extracting parameter estimates across models | Within-list piping for nested edits | Tips for large model libraries

Last update: 2026-08-14
Started: 2026-06-13

Initial conditions cheatsheet
Two forms accepted inside nlmixr2targets | What tar_nlmixr() does behind the scenes | Pipe forms | Known limitation: env functions never routed through tar_nlmixr() | Summary

Last update: 2026-06-13
Started: 2026-06-13