Package: nlmixr2rpt 0.2.0

John Harrold

nlmixr2rpt: Templated Word and PowerPoint Reporting of 'nlmixr2' Fitting Results

This allows you to generate reporting workflows around 'nlmixr2' analyses with outputs in Word and PowerPoint. You can specify figures, tables and report structure in a user-definable 'YAML' file. Also you can use the internal functions to access the figures and tables to allow their including in other outputs (e.g. R Markdown).

Authors:John Harrold [aut, cre]

nlmixr2rpt_0.2.0.tar.gz
nlmixr2rpt_0.2.0.zip(r-4.5)nlmixr2rpt_0.2.0.zip(r-4.4)nlmixr2rpt_0.2.0.zip(r-4.3)
nlmixr2rpt_0.2.0.tgz(r-4.4-any)nlmixr2rpt_0.2.0.tgz(r-4.3-any)
nlmixr2rpt_0.2.0.tar.gz(r-4.5-noble)nlmixr2rpt_0.2.0.tar.gz(r-4.4-noble)
nlmixr2rpt_0.2.0.tgz(r-4.4-emscripten)nlmixr2rpt_0.2.0.tgz(r-4.3-emscripten)
nlmixr2rpt.pdf |nlmixr2rpt.html✨
nlmixr2rpt/json (API)
NEWS

# Install 'nlmixr2rpt' in R:

install.packages('nlmixr2rpt', repos = c('https://nlmixr2.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/nlmixr2/nlmixr2rpt/issues

On CRAN:

13 exports 2 stars 1.02 score 197 dependencies 12 scripts 259 downloads

Last updated 2 months agofrom:dd0f2fb71c. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Aug 23 2024
R-4.5-win	OK	Aug 23 2024
R-4.5-linux	OK	Aug 23 2024
R-4.4-win	OK	Aug 23 2024
R-4.4-mac	OK	Aug 23 2024
R-4.3-win	OK	Aug 23 2024
R-4.3-mac	OK	Aug 23 2024

Exports:build_figures build_tables eval_str fetch_fdim fetch_fit_example fetch_option gen_pest_table mk_error_fig mk_error_tab process_ph report_fit write_figure yaml_read_fit

Dependencies:abind askpass assertthat backports base64enc BH binom bit bit64 bitops boot broom bslib cachem car carData cellranger checkmate class classInt cli clipr cluster colorspace commonmark corrplot cowplot cpp11 cpp11armadillo crayon crul curl data.table Deriv DescTools digest doBy dparser dplyr e1071 evaluate Exact expm fansi farver fastmap flextable fontawesome fontBitstreamVera fontLiberation fontquiver foreign Formula fs gdtools generics gfonts ggforce ggplot2 ggpubr ggrepel ggsci ggsignif ggtext gld glue gridExtra gridtext gtable highr Hmisc hms htmlTable htmltools htmlwidgets httpcode httpuv httr inline isoband jpeg jquerylib jsonlite KernSmooth knitr labeling later lattice lazyeval lbfgsb3c lifecycle lme4 lmom lotri magrittr markdown MASS Matrix MatrixModels memoise mgcv microbenchmark mime minpack.lm minqa modelr munsell mvtnorm n1qn1 nlme nlmixr2 nlmixr2data nlmixr2est nlmixr2extra nlmixr2plot nloptr nnet numDeriv officer onbrand openssl pander pbkrtest pillar pkgconfig png polyclip polynom PreciseSums prettyunits progress promises proxy purrr qs quantreg R6 ragg RApiSerialize rappdirs RColorBrewer Rcpp RcppArmadillo RcppEigen RcppParallel RCurl readr readxl rematch rex rlang rmarkdown rootSolve rpart rstatix rstudioapi rxode2 rxode2ll sass scales shiny sitmo sourcetools SparseM StanHeaders stringfish stringi stringr survival symengine sys systemfonts textshaping tibble tidyr tidyselect tinytex triebeard tweenr tzdb urltools utf8 uuid vctrs viridis viridisLite vpc vroom withr xfun xgxr xml2 xpose xpose.nlmixr2 xtable yaml zip

Accessing Figures and Tables

Rendered fromAccessing_Figures_and_Tables.Rmdusingknitr::rmarkdownon Aug 23 2024.

Last update: 2022-09-09
Started: 2021-10-17

Reporting nlmixr2 Fit Results

Rendered fromReporting_nlmixr_Fit_Results.Rmdusingknitr::rmarkdownon Aug 23 2024.

Last update: 2024-07-24
Started: 2021-10-13

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Generates Figures for an 'nlmixr2' Report	build_figures
Generates Tables for an 'nlmixr2' Report	build_tables
Evaluate R Code in String	eval_str
Gets Figure Dimensions	fetch_fdim
Fetch Fit Example	fetch_fit_example
Fetch Analysis Options	fetch_option
Makes 'nlmixr2' Parameter Estimate Table for Reporting	gen_pest_table
Generates 'ggplot' Object with Error Message	mk_error_fig
Generates a 'flextable' Object with Error Message	mk_error_tab
Substitutes Placehodlers in Strings	process_ph
Report 'nlmixr2' Fit Results to PowerPoint and Word	report_fit
Writes Figures to File	write_figure
Reads and Checks 'report_fit.yaml' File	yaml_read_fit