Package: nlmixr2rpt 0.2.2

John Harrold

nlmixr2rpt: Templated Word and PowerPoint Reporting of 'nlmixr2' Fitting Results

This allows you to generate reporting workflows around 'nlmixr2' analyses with outputs in Word and PowerPoint. You can specify figures, tables and report structure in a user-definable 'YAML' file. Also you can use the internal functions to access the figures and tables to allow their including in other outputs (e.g. R Markdown).

Authors:John Harrold [aut, cre]

nlmixr2rpt_0.2.2.tar.gz
nlmixr2rpt_0.2.2.zip(r-4.7-any)nlmixr2rpt_0.2.2.zip(r-4.6-any)nlmixr2rpt_0.2.2.zip(r-4.5-any)
nlmixr2rpt_0.2.2.tgz(r-4.6-any)nlmixr2rpt_0.2.2.tgz(r-4.5-any)
nlmixr2rpt_0.2.2.tar.gz(r-4.7-any)nlmixr2rpt_0.2.2.tar.gz(r-4.6-any)
nlmixr2rpt_0.2.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
nlmixr2rpt/json (API)

# Install 'nlmixr2rpt' in R:

install.packages('nlmixr2rpt', repos = c('https://nlmixr2.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/nlmixr2/nlmixr2rpt/issues

Pkgdown/docs site:https://nlmixr2.github.io

On CRAN:

3.90 score 5 stars 16 scripts 395 downloads 14 exports 165 dependencies

Last updated from:8573fb83db. Checks:6 ERROR, 2 FAIL, 1 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	ERROR	199
source / vignettes	ERROR	284
linux-release-x86_64	ERROR	219
macos-release-arm64	ERROR	146
macos-oldrel-arm64	ERROR	104
windows-devel-x86_64	ERROR	488
windows-release-x86_64	FAIL	108
windows-oldrel-x86_64	FAIL	89
wasm-release	OK	176

Exports:build_figures build_tables eval_str fetch_fdim fetch_fit_example fetch_option gen_pest_table mk_error_fig mk_error_tab process_ph report_fit safe_text write_figure yaml_read_fit

Dependencies:abind armadillo4r askpass backports base64enc BH bit bit64 boot broom bslib cachem car carData checkmate class classInt cli clipr colorspace commonmark corrplot cowplot cpp11 cpp4r crayon curl data.table Deriv digest doBy dparser dplyr e1071 evaluate farver fastmap flextable fontawesome fontBitstreamVera fontLiberation fontquiver forecast Formula fracdiff fs gdtools generics ggforce ggplot2 ggpubr ggrepel ggsci ggsignif ggtext glue gridExtra gridtext gtable highr hms htmltools inline isoband jpeg jquerylib jsonlite KernSmooth knitr labeling lattice lbfgsb3c lifecycle litedown lme4 lmtest lotri magrittr markdown MASS Matrix MatrixModels memoise mgcv mime minqa mirai modelr n1qn1 nanonext nlme nlmixr2data nlmixr2est nlmixr2extra nloptr nnet numDeriv officer onbrand openssl pbkrtest pillar pkgconfig png polyclip polynom PreciseSums prettyunits progress proxy purrr quantreg R6 ragg rappdirs rbibutils RColorBrewer Rcpp RcppArmadillo RcppEigen RcppParallel Rdpack readr reformulas rex rlang rmarkdown rstatix rxode2 rxode2ll S7 sass scales sitmo SparseM StanHeaders stringi stringr survival symengine sys systemfonts textshaping tibble tidyr tidyselect timeDate tinytex tweenr tzdb urca utf8 uuid vctrs viridisLite vpc vroom withr xfun xml2 xpose xpose.nlmixr2 yaml zip zoo

Vignettes and/or manual for this package failed to build, some documents may be unavailable. Please inspect thebuild logs for more information.

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Generates Figures for an 'nlmixr2' Report	build_figures
Generates Tables for an 'nlmixr2' Report	build_tables
Evaluate R Code in String	eval_str
Gets Figure Dimensions	fetch_fdim
Fetch Fit Example	fetch_fit_example
Fetch Analysis Options	fetch_option
Makes 'nlmixr2' Parameter Estimate Table for Reporting	gen_pest_table
Generates 'ggplot' Object with Error Message	mk_error_fig
Generates a 'flextable' Object with Error Message	mk_error_tab
Substitutes Placehodlers in Strings	process_ph
Report 'nlmixr2' Fit Results to PowerPoint and Word	report_fit
Escapes Curly Braces for cli functions	safe_text
Writes Figures to File	write_figure
Reads and Checks 'report_fit.yaml' File	yaml_read_fit