Package: nlmixr2rpt 0.2.1
John Harrold
nlmixr2rpt: Templated Word and PowerPoint Reporting of 'nlmixr2' Fitting Results
This allows you to generate reporting workflows around 'nlmixr2' analyses with outputs in Word and PowerPoint. You can specify figures, tables and report structure in a user-definable 'YAML' file. Also you can use the internal functions to access the figures and tables to allow their including in other outputs (e.g. R Markdown).
Authors:
nlmixr2rpt_0.2.1.tar.gz
nlmixr2rpt_0.2.1.zip(r-4.5)nlmixr2rpt_0.2.1.zip(r-4.4)nlmixr2rpt_0.2.1.zip(r-4.3)
nlmixr2rpt_0.2.1.tgz(r-4.4-any)nlmixr2rpt_0.2.1.tgz(r-4.3-any)
nlmixr2rpt_0.2.1.tar.gz(r-4.5-noble)nlmixr2rpt_0.2.1.tar.gz(r-4.4-noble)
nlmixr2rpt_0.2.1.tgz(r-4.4-emscripten)nlmixr2rpt_0.2.1.tgz(r-4.3-emscripten)
nlmixr2rpt.pdf |nlmixr2rpt.html✨
nlmixr2rpt/json (API)
NEWS
| # Install 'nlmixr2rpt' in R: |
| install.packages('nlmixr2rpt', repos = c('https://nlmixr2.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/nlmixr2/nlmixr2rpt/issues
Last updated 2 months agofrom:b4c9db7af8. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 14 2024 |
| R-4.5-win | OK | Nov 14 2024 |
| R-4.5-linux | OK | Nov 14 2024 |
| R-4.4-win | OK | Nov 14 2024 |
| R-4.4-mac | OK | Nov 14 2024 |
| R-4.3-win | OK | Nov 14 2024 |
| R-4.3-mac | OK | Nov 14 2024 |
Exports:build_figuresbuild_tableseval_strfetch_fdimfetch_fit_examplefetch_optiongen_pest_tablemk_error_figmk_error_tabprocess_phreport_fitwrite_figureyaml_read_fit
Dependencies:abindaskpassassertthatbackportsbase64encBHbinombitbit64bitopsbootbroombslibcachemcarcarDatacellrangercheckmateclassclassIntclicliprclustercolorspacecommonmarkcorrplotcowplotcpp11cpp11armadillocrayoncurldata.tableDerivDescToolsdigestdoBydparserdplyre1071evaluateExactexpmfansifarverfastmapflextablefontawesomefontBitstreamVerafontLiberationfontquiverforcatsforeignFormulafsgdtoolsgenericsggforceggplot2ggpubrggrepelggsciggsignifggtextgldgluegridExtragridtextgtablehavenhighrHmischmshtmlTablehtmltoolshtmlwidgetshttrinlineisobandjpegjquerylibjsonliteKernSmoothknitrlabelinglatticelazyevallbfgsb3clifecyclelme4lmomlotrimagrittrmarkdownMASSMatrixMatrixModelsmemoisemgcvmicrobenchmarkmimeminpack.lmminqamodelrmunsellmvtnormn1qn1nlmenlmixr2nlmixr2datanlmixr2estnlmixr2extranlmixr2plotnloptrnnetnumDerivofficeronbrandopensslpanderpbkrtestpillarpkgconfigpngpolyclippolynomPreciseSumsprettyunitsprogressproxypurrrqsquantregR6raggRApiSerializerappdirsRColorBrewerRcppRcppArmadilloRcppEigenRcppParallelRCurlreadrreadxlrematchrexrlangrmarkdownrootSolverpartrstatixrstudioapirxode2rxode2llsassscalessitmoSparseMStanHeadersstringfishstringistringrsurvivalsymenginesyssystemfontstextshapingtibbletidyrtidyselecttinytextweenrtzdbutf8uuidvctrsviridisviridisLitevpcvroomwithrxfunxgxrxml2xposexpose.nlmixr2yamlzip
Accessing Figures and Tables
Rendered fromAccessing_Figures_and_Tables.Rmdusingknitr::rmarkdownon Nov 14 2024.Last update: 2024-09-19
Started: 2021-10-17
Reporting nlmixr2 Fit Results
Rendered fromReporting_nlmixr_Fit_Results.Rmdusingknitr::rmarkdownon Nov 14 2024.Last update: 2024-07-24
Started: 2021-10-13
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Generates Figures for an 'nlmixr2' Report | build_figures |
| Generates Tables for an 'nlmixr2' Report | build_tables |
| Evaluate R Code in String | eval_str |
| Gets Figure Dimensions | fetch_fdim |
| Fetch Fit Example | fetch_fit_example |
| Fetch Analysis Options | fetch_option |
| Makes 'nlmixr2' Parameter Estimate Table for Reporting | gen_pest_table |
| Generates 'ggplot' Object with Error Message | mk_error_fig |
| Generates a 'flextable' Object with Error Message | mk_error_tab |
| Substitutes Placehodlers in Strings | process_ph |
| Report 'nlmixr2' Fit Results to PowerPoint and Word | report_fit |
| Writes Figures to File | write_figure |
| Reads and Checks 'report_fit.yaml' File | yaml_read_fit |
