NEWS

nlmixr2extra 5.1.0

Add focei/foce linearization
Add formula interface
Add vignettes on linearization, formula interface, log-likelihood profiling and preconditioning.

nlmixr2extra 5.0.0 (2025-11-29)

Update internal fit to be nlmixr2est 5.0.0 fit object

nlmixr2extra 3.0.3

Allow raw fits to be returned (or only the parameters)

nlmixr2extra 3.0.2 (2025-02-17)

Make sure bootstrapped thetas are named. Fixed issue #76

nlmixr2extra 3.0.1 (2024-10-29)

Remove non-functioning SCM for now (#71)

nlmixr2extra 3.0.0 (2024-09-18)

New profile() method for likelihood profiling (Issue #1)

nlmixr2extra 2.0.10 (2024-05-29)

bootstrapFit() fixes se option (Issue #66)

nlmixr2extra 2.0.9 (2024-01-31)

bootstrapFit() now will be more careful handling NA values so they do not completely affect results (Issue #59)
bootstrapFit() will now only take the correlation of the non-zero diagonals (Issue #59).
New method for knit_print() will generate model equations for LaTeX reporting automatically.
Tests are now skipped if they contain linear compartment models that need gradients when the gradients are not compiled (as in the case of intel c++).

nlmixr2extra 2.0.8 (2022-10-22)

Use assignInMyNamespace() instead of using the global assignment operator for the horseshoe prior
Be specific in version requirements (as requested by CRAN checks)
Move the theoFitOde.rda data build to devtools::document() to reduce CRAN build time (could add more standard models like warfarin for package developers which takes way too much time for CRAN)

nlmixr2extra 2.0.7 (2022-10-19)

Fix cli issues with the new cli 3.4+ release that will allow bootstrapping to run again (before cli would error, this fixes the donttest issues on CRAN).
Fixed step-wise covariate selection to work a bit better with the updated UI, thanks to Vishal Sarsani
Added lasso covariate selection (thanks to Vishal Sarsani)
Added horseshoe prior covarite selecion (thanks to Vishal Sarsani)
Added a NEWS.md file to track changes to the package.