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      "title": "As lower triangular matrix",
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        "as.lotri.data.frame",
        "as.lotri.default",
        "as.lotri.matrix"
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    },
    {
      "page": "lotri",
      "title": "Easily Specify block-diagonal matrices with lower triangular info",
      "topics": [
        "lotri"
      ]
    },
    {
      "page": "lotriAsExpression",
      "title": "Change a matrix or lotri matrix to a lotri expression",
      "topics": [
        "lotriAsExpression"
      ]
    },
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        "lotriDataFrameToLotriExpression"
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        "lotriEst"
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      "title": "Create a matrix from a list of matrices",
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        "lotriMat"
      ]
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        "lotriMatInv"
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      "title": "C++ implementation of Matrix's nearPD",
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